Scaffold JGI20160J14292_10009848

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10009848
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6257
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008696	Metagenome / Metatranscriptome	329	Y
F022653	Metagenome / Metatranscriptome	213	N
F035746	Metagenome	171	N
F092061	Metagenome	107	Y
F094525	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100098481	F035746	AGG	MKEHKHDFKKLLHVAFKYYKENNCCTVIAVAVAANIGFGKAYHAMKREGRQDRRGAYFAQYESALNKLGYRVEPSEVYMGKTLVTAKRICPKRGTFLIRSAGHVTCIRDGVMVDWAEDRNSRKRVRAVYEVIKN*
JGI20160J14292_1000984810	F094525	AGG	MITIEGRTFLLTQQKEAIAFLEGMLYDLDRHALVVVSGYGMLLDDHKQLEEFLNNEPSAFIH*
JGI20160J14292_1000984813	F022653	N/A	MNIFKRLFRWAVSVFNDIFEGNLTDSEKDSLFWLFVTLWGLVMVTFFILHESTGAVFEL*
JGI20160J14292_100098484	F092061	AGGAGG	MNKETAEGIIELFVESYTASTKEKRGFAEWRIKAARKGLGLHPEEVRFFEKEAVSRLHFKHWRRKLEEVA*
JGI20160J14292_100098485	F008696	AGGAGG	MTNWHSETIERFKTLGSDALLYIRQDAYNAAKAGETIDNPKVGQYWDEFHYAAQELRRRKVTAVEFKETIS*