Scaffold JGI20160J14292_10007466

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10007466
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7535
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017756	Metagenome	239	Y
F047366	Metagenome / Metatranscriptome	150	N
F084262	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000746611	F047366	GAGG	MTYSGIFDEVDLKEVKKLKDEINKLKKEIDLLETHATIKDFQIEKLRERLKK*
JGI20160J14292_1000746617	F084262	N/A	MYVIDYPKQKIKKFSNQELESFLNTIIKKRFIFVKDKVKAKKFLKQIIKK*
JGI20160J14292_1000746622	F017756	N/A	MATLMELVKIQAVIDNRAIASDTMETLETTYRYSKSKGVNIKIGDMHIDHFLRSLNLEKFQKNVVDIQTAQIIERQKKTLIKIKRLINEK*