Scaffold JGI20160J14292_10006312

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10006312
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8380
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014724	Metagenome / Metatranscriptome	260	Y
F044418	Metagenome / Metatranscriptome	154	N
F067627	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_100063121	F067627	AGTAG	MKTLLKVLSKTQFGFVTKEDLDVLEVEMPNLPLLIRCGCDRYIAQAQDTKARMDYVEETGDYVRDVSIPSRTLDGMSTSPFVPFAVKQAIESMRVF*
JGI20160J14292_100063126	F044418	N/A	MSHEQRMIDYAQKWYKENDLETEKKNGNDLYLRVNDNVFTEVSHCDIRQKAMLWLESELEGVNNY*
JGI20160J14292_100063127	F014724	AGGAG	MKQELTAIKDAIHGLSDEMLEHRRHANMEDLVKVMKSIDESLCSIRFGIADLVQEKKMQNELTSALR*