Scaffold JGI20160J14292_10005937

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10005937
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8705
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017486	Metagenome / Metatranscriptome	240	N
F025716	Metagenome / Metatranscriptome	200	Y
F049548	Metagenome	146	Y
F091751	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000593714	F017486	AGGA	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIAEGFDLAPGDEINAVLVPNYQDKSDKGTPWQAVKLQRDTEVCEKAIIDNSQTLNNEALDAEMLTYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQQRPTMILWAASAKTFIEVV*
JGI20160J14292_1000593716	F049548	N/A	MNERQKKIAECTKDFLVALPKNMKGIDLGAIVCTIFESFDLDHEERVHVCEGVLNVMLEVEMRDDERAAQAADDVIARAAAKARK*
JGI20160J14292_100059375	F025716	GAGG	MDDKELERMINAAGLIGAVFGFASGAGLMMLVGIIF*
JGI20160J14292_100059379	F091751	GGA	MSEMFYATPNQMYRINKLTHLLSGASGSPSASLPISKSDADALIKDMIKAEKLLSKSDTEEPKKVKRLKRAKPNRDEEIKVIKISI*