Scaffold JGI20160J14292_10001806

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10001806
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17601
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017994	Metagenome	237	Y
F036002	Metagenome / Metatranscriptome	171	Y
F081876	Metagenome	114	N
F102044	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000180620	F081876	N/A	MMLKFKKSELFKFNGGHYVIKTLAYKLLETRAAQRTFDKANSITHPTKGEMVLVPHNVKFEITK*
JGI20160J14292_1000180633	F017994	AGGA	MTLEEFITHKTSWANGFSEHMKLSNIDFETYMRMNGLGKEEFAILNNKSNEKIS*
JGI20160J14292_1000180637	F102044	N/A	MSEKTGHTVKIKYDFPEQLCCEVYVPNLEDWFRVTPNEFRSWVGQRRILRLKGKVGDGDITSYYEPYEGPTYLFGTNKKISSNKYKLNSVAFVNNKDPRIFQRRPYEQL*
JGI20160J14292_1000180639	F036002	N/A	TKLTSQLKKSKDECMKGNNEIDLEIANEHSNPFYVMDEFARVFVGLRHGYPHFSDNINEAKQIYNNAQFRNIKYGHTYKIERVELQDLL*