Scaffold JGI20160J14292_10001790

Overview

Basic Information

• Taxon OID: 3300001349
• Scaffold ID: JGI20160J14292_10001790
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17698
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092352	Metagenome / Metatranscriptome	107	N
F095740	Metagenome	105	N
F103549	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000179021	F092352	N/A	MNIIATTLKSIIEAQGLTYLRAANPSDLNELVGNYDLSAGVGVYANLPTVDNITYSQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSEVLSGWKLSFVLPIFRDTFECA*
JGI20160J14292_100017903	F095740	N/A	MEEWLTEHWATLLAALGLGGGGSVVGHKMVDKIQNKKIEKLEIKVSEIDSNIKVNDGVDKQFRKEVDTRLGNIETSLSTLTNHLLSKKK*
JGI20160J14292_100017907	F103549	N/A	MSCAGIFSGATVSCSDPLAVGIEQRLFLANLEDVASFTFDGTETNMVTAITMKATKTFFEFEGLKQSISTQSEYMPKPYSVGYKHTVDFSVFNVTAEQRRNLEAMAFQPQVAIAYGPNDSSLGNAAFEILGINAGLEIVTNIRIPADNETGGAYRIQLATPDAGGIESQLPSVFWTDPSTGTYASALTAIEALLV*