Scaffold JGI20160J14292

Basic Information
Taxon OID	3300001349 Open in IMG/M
Scaffold ID	JGI20160J14292_10000119 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001349 Open in IMG/M

Scaffold ID

JGI20160J14292_10000119 Open in IMG/M

Source Dataset Name

Pelagic Microbial community sample from North Sea - COGITO 998_met_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70588
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (21.13%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

70588

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (21.13%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Helgoland, sampling site Kabeltonne

Coordinates

Lat. (^o)

54.184167

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F015210	Metagenome / Metatranscriptome	256	Y
F029447	Metagenome / Metatranscriptome	188	Y
F029448	Metagenome / Metatranscriptome	188	Y
F040126	Metagenome / Metatranscriptome	162	N
F042621	Metagenome / Metatranscriptome	158	Y
F059988	Metagenome / Metatranscriptome	133	Y
F080618	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI20160J14292_1000011918	F040126	N/A	MKKVPLFEDFVPVGFGGSNAANYGLGGGYKETGYDMNAIVGPVEQCSNHVAEQANSYESNDNAEHTAEAYIKEAKKHINDKIDEACENYAAGAMEESTVNEGTDISSWNQAGIKGSDNAQITTFAGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV*
JGI20160J14292_1000011925	F015210	N/A	MELFEKYRKWGKDITVFDVDDTLIVTKSKIKVFNPKTGYEIDLTPQEFNTFKTKPHDEFDFNDFRDLEILKAGKIIDWVFKILKRTIAKGTAVGIITARDDSKLIYDFLMHNGVDVNPDFIFAINDPSLGFTGSTAQKKKDAFMKFVQMGFRNFQFFDDDKENIRIANSLNKDLPEVRMKATLIKQKWIPNFSDFK*
JGI20160J14292_1000011929	F042621	N/A	MENTEEVNLQWIKGDKFGSVETVESTEGEWTIFKNGGRIATSLLSEFLEPIDGEPLDFSPPTPALIKAAEVYKEKVTPQKAITSPIRTLFDKQKKNDKVKLNLSFPIDVPKKAIYEIISSSFDSEEVNDELEVFIKNQISEDLILDSLFDSIKELIKTRYGID*
JGI20160J14292_1000011933	F004606	GAG	MKAHRIFTKGQIVYCLLSSFSRPNVLLPVKGLIVDTQWDPINPLYQIRIIKMYDNMKYLKSHFFDMNFKYEFNNRARKMPIKKEDFKNVKSLEDRFDEIDRDRLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFNVRFKKGWVDKFQKGDIDIDKYLNSLG*
JGI20160J14292_1000011935	F029447	N/A	MNVKSLTLKNKLTLDKTGEGYWDLTAPSFIYDADLGVRALHYVTQDQVGRIDKISEVYFGSGEFIDAICVVNNIFNPFSVNEGDILIIPNLKRKDIVYKKPNPAVTPSAPQEAYVDTGRQSEKDQGRMQRLIEKAKSSEAGVKQPMPPNMLQPGQESKTYSGGKIQLGTNLKSKSTLKKSQTN*
JGI20160J14292_1000011945	F059988	GAGG	MNRATEKRTGMPSVYKATYEEGWELKNLGNDYNENLMRNSFSNYMFRNERLSTFLDSYLKPIMTFWINKVKYLRIYYNFGVPKDYQKIN*
JGI20160J14292_1000011946	F080618	N/A	MVNNWKHLNFFDKGGKYLNFDYDPSEDKWSGTMYLPEVSIGLFEVGQIFILEEFVNKNTNLKEFGFPHGIEVATGTTGSTGGVCEWTAEWETTDPNEIFLFQFDMDFNTGTQTSLEMEADGPPLEVITELEISLNSDPTETIDPQGYTVTDVINPEALQLNIAIRSEKENTFKRTLYIKDSCKDKIIAEILIYGETTGEDERLRVMTQNMGYNILESDSEIFRNTNIKELLPDFDEVNLKRKEIMMEGYNIYPFIGSYKGLINAIKFFGYDTLKVREFWKNVDANSPMFGKYIMSNDISVFEPSVQLNDKTITLPNKKFRKTSLFSLVYRINNIVPNRFDEESLPITEENYDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTISRNDKREIVAGINTNFKLSTEDCIYMEDLRSFSSFCLASEGIVDEAIVNFCNAYIAPLSPVNAIGRNLLLGPTTPGQVYPPSPIGPDFNGPMGIPYDGSNVTIAGLADAFLAYFTRYAPDLNKVGVWPDGESSYYLPDKPGIPVGAMTILENDSFNNITWDNVDSTWNQLNDANKFFTFDIDPQGVVAGDVFTINDPDTNTGATYTAVLGDTDTDVRNALYNQLIALNNLFNQPWIWWDITKESGVTGDVVRLFGQNVDRLKVSCESIYGSQLLFNQLPGETLFTWDGIERGNFEEIEWTIYXEETDISPSYYKVFRGPLSQYNKLPIILPYVGTYSVEMKLFDLYNNISSNVKTDFICVENREVEYSGWYQAREANYSWNSEAKEVWNNYGSLWNLPITPSVTWDEESPSLYESLDRVNAILNNFGLGASPDFQLLNYQDDGKASFSGPYRWDNLTTGGWDDTYHLWWDMTSTSGDTPAFFQFKEVQPETYLKITALNGDTAEHYFDSSITTLAEAAADLNVSTNTIINKYVYNVVYDVSNNQMFVQAVCRYFGLHGDFKTVDMVYADGDNVCPSTGTGSPWPTGDDDCPSLIYRKGQSVASNPTWNTAKFINNGKTLPKMTWVMFVYDKCKIPGKGKPRWIIKNTTNSSMADIYFESKYLTYLFKNSGKYEITLELTDTNGNKYKKNRNILVIK*
JGI20160J14292_1000011947	F029448	N/A	MAISVTEILGTDSLSGSRLVLNDNFNILTSEINAMEVYFNPTAGTLSNLQNVQTEALRVGLSTVLLDINASTFDVLTNVNMTGNLNLNGGGLFRNDVDPQTLNDGFATGAPGVITVGTSTAIPPYTVERVGNSTGTVVTIQLNDGAIGQELFFVYSEAQTGLITIQGASTPLVLPGGTKIDLDAQGKTAHLLCVDDGTGNGVWFLVGGTGYTIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI20160J14292_10000119

Overview

Ecosystem & Geography

Associated Families

Sequences