Scaffold JGI20154J14316_10014289

Overview

Basic Information

• Taxon OID: 3300001348
• Scaffold ID: JGI20154J14316_10014289
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4807
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019909	Metagenome / Metatranscriptome	227	Y
F026537	Metagenome / Metatranscriptome	197	N
F036969	Metagenome / Metatranscriptome	169	N
F068220	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_1001428911	F019909	N/A	MTNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDHIDSQLVTK*
JGI20154J14316_1001428912	F068220	N/A	MKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKARVLALLTKAEHEEVITHTDGTQDIIVYDDLNSEQEILKIVEVNPLWDTDHFNPANSSTREWLMWNQMESEAMYDGEYLPTDMGCIKEATDILYGTNESMLMEPWADFVGGIYYRGEAMLDADDVCIYFFRVPKSDTL*
JGI20154J14316_1001428914	F026537	N/A	MKQEIIDRLEYVEETYAGEMETWRDPVTEAYYHVPIEIVRDWDNSELLESNKQNKMTHKRKEQHIKQLAFSINHGASGYVTDNFVIEDLPTPQRTGTMTQQDTYSKHKARQIFEAFLEQNPNIND*
JGI20154J14316_100142894	F036969	N/A	MNTMFSTHAIRLAYGKTLMDGGSSLLTSDGYDFEVPYKGFMVGGVAGETKIPLDICDSTTFHSIWHKYSAEVRKLIKDNPSSSYAVGTWVDKGCIVFDVSEKLTDSRSAYDLCKERNEDAYYDVEASKSVFIEKDNDNAEA*