Scaffold JGI20154J14316_10012004

Overview

Basic Information

• Taxon OID: 3300001348
• Scaffold ID: JGI20154J14316_10012004
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5468
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F020174	Metagenome	225	Y
F022880	Metagenome	212	N
F030437	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20154J14316_100120041	F022880	N/A	MFFVTAQKRTDRLNICKGCEHFVESTKSCGDLVTEAFTDSELCGCHMPTKTRLKVASCPLGKWEAVIKQADIDAIKTFLKTDNQFRTNGQLAQLYSKVTGTNTQASQCSSCNRRMMAEL
JGI20154J14316_1001200410	F020174	N/A	MKINSYKMDEIKEDVLKYWTWAQEEFKGEDIDRLMFEVDSAITNLNRHINNEFKRKNEEGKANLRSK*
JGI20154J14316_1001200411	F030437	N/A	MIHSQEENWVTGKTHTRSASAYRTSIWTPVDEYDFDKNREKYIEAGWKSYCWTKGAEGYDKYFLSKLPKDEFEHLLMVEKKYGYFTLFFHIDED*
JGI20154J14316_1001200414	F007366	N/A	MRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTETSDEEKIEAKLLMEEIANADRANARNREIEITKSLGERDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKK*