Scaffold JGI20156J14371_10034087

Overview

Basic Information

• Taxon OID: 3300001347
• Scaffold ID: JGI20156J14371_10034087
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2418
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034927	Metagenome	173	Y
F040577	Metagenome / Metatranscriptome	161	Y
F048887	Metagenome	147	Y
F068602	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20156J14371_1003408712	F034927	N/A	MKLNIFKLPDQWTDAEIEHLYDTNWNITLEQLSLLTNRTIQQLEELLLPN*
JGI20156J14371_100340873	F040577	N/A	MTELQRISIEIVEIFQNKISKLTKDQTEQLNIHNNSMNFYVQLGDEQKALWEAKNTLEYLEEITQ*
JGI20156J14371_100340874	F068602	AGGAG	MEDDDPHADEMLEKSNFIVNQLAKDIHLYSDQQIEDILLMQQSMEFFLKQDDTNKAIIECRNLYNYLSEITQ*
JGI20156J14371_100340875	F048887	N/A	MHIRREIDNLLDKMIEITANKKESNKESRELNEIKDEIRRKTDNGKRAKGMWTDSPEFVSIQ*