Basic Information | |
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Taxon OID | 3300001347 Open in IMG/M |
Scaffold ID | JGI20156J14371_10015094 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_06 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4498 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012863 | Metagenome | 276 | Y |
F057323 | Metagenome | 136 | N |
F068778 | Metagenome | 124 | N |
F090089 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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JGI20156J14371_100150942 | F012863 | N/A | MKNYKEYLDYCKSLAEDINDSYSDDIDVNDRIHEIADGCQYVIYYSKAWDLVNMMRGYNHELFMQAVEEVRDNGFEFDNEDAMRDLNTHMTWIAFFLIRNGIHSAYQHIESEVVA* |
JGI20156J14371_100150945 | F068778 | N/A | MTHNASYVSQMKNMNYLLGNKNIVNWGVFAEVEDSTDPELTQAVELVLPEHIQQEIYKLITDNIDQAKAIEAMAQF* |
JGI20156J14371_100150946 | F057323 | N/A | MKILVLTIRLHGEEDDIYVFDNREVNVLPTIKEWLKENDEWLKENDEYLDLPAYVTDSESFWKWYRNEDDIDHIFIGTHYKELLSE* |
JGI20156J14371_100150947 | F090089 | AGGAG | MSVTYYLTDHNGNQIAFFYRVESERYNTVPSILWACRQYPQFQGSASSKGDFIEQAKQTLKEIKKLSVPVRSSKKCTDCDLSLQGMENEGTTCNDHNFNR* |
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