NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20156J14371_10008522

Scaffold JGI20156J14371_10008522


Overview

Basic Information
Taxon OID3300001347 Open in IMG/M
Scaffold IDJGI20156J14371_10008522 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6594
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita → Coraliomargarita akajimensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029766Metagenome / Metatranscriptome187N

Sequences

Protein IDFamilyRBSSequence
JGI20156J14371_100085226F029766GGAMTKKFNFTVWSFASCVAGLLLAGGMGLAEGSNLWPLGAIWGGLVGLIIGAIFGVILKLIKVPMKYAWWFLGVLVFLAFFMRIYIKYYYISDYGKLVEASIVECETSSFLFTPLYRNGKERREINGTDLTLNVTRERKLGKYEDGRIKVYEWRLANYKKTYFMEEAKCETMTPGKVIFMRTRDYGLDYGYVHRIHWNMNTISRDERFIVDR*

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