Basic Information | |
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Taxon OID | 3300001347 Open in IMG/M |
Scaffold ID | JGI20156J14371_10006936 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_06 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7557 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (92.59%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003834 | Metagenome / Metatranscriptome | 466 | N |
F009561 | Metagenome / Metatranscriptome | 316 | N |
F087245 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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JGI20156J14371_1000693618 | F003834 | AGGAG | MSSTKTPIRQAEMDYVDHFIETKYDDRKNTLKTEMQDIIDKEAEENFEAFKNKLNINKMHKEVSVLYEDHKKFANEMDSILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKEPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMSKEYCKNLLNAGQSLATVWQVLGKEMSKEKINTSTLPKPEFLAITK* |
JGI20156J14371_1000693624 | F087245 | AGGAGG | MTKESLNDSLFELNKIILDLRSKLSKSLQEVLQLRKDLDLEKEEHQLTQLKYESMKNNLDNLISDKLNTARDALEEMQK* |
JGI20156J14371_1000693626 | F009561 | GGA | MTELKDEHLEVISKNKSRKYEIDNLVNQLSDAKESVAVLSNAIECGFLHDKHSLILQEWIVEYEQLSQQLDTHLTEVRDHG* |
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