Scaffold JGI20156J14371_10006287

Overview

Basic Information

• Taxon OID: 3300001347
• Scaffold ID: JGI20156J14371_10006287
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8041
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016739	Metagenome / Metatranscriptome	245	Y
F042579	Metagenome	158	N
F044160	Metagenome	155	N
F057691	Metagenome	136	N
F096053	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20156J14371_1000628711	F096053	N/A	MAIGKKNSGFYKQDAVMGKLSADARKPYKVNAVVAQALEQGKRRKAYLEERAKNHVPRFVK*
JGI20156J14371_1000628722	F016739	N/A	MRLNGGLLSEGTSEWVRLRRAWKKWNASCHPDDQIDWIEFLEEHS*
JGI20156J14371_1000628724	F044160	N/A	MVKFWTLMSGTSYIASISNPSYTQNPFCAVKYESIKKADVAANEWKRKYGLPVMVHVILEEDYERLAHRGFYSENL*
JGI20156J14371_1000628725	F042579	N/A	MKKFNAFEKGLIVDALNYYVANLEAEVEEASGGGVTIVAPGFYTMAKNELIDKVESLTKKSK*
JGI20156J14371_100062873	F057691	AGGAG	MIASIKKIQEQLTEAKRQLLNAQCIHKVDRGDTARFRVQAALGVVQRLDKEVGDRIAWEKWGKGPWPEDGNKV*