NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20156J14371_10002201

Scaffold JGI20156J14371_10002201


Overview

Basic Information
Taxon OID3300001347 Open in IMG/M
Scaffold IDJGI20156J14371_10002201 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15582
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020012Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
JGI20156J14371_100022012F020012N/AMAEELIPLNAFKSVLTTLTGDNDVVYSAPKGVSTILLSAQITNTGPINEPVTISITSNRDLPVPQVDSISNAGNFLSASALIEKNQTFLEKESAAYINFQNNLTQIPFSFTSSFFEAYVRTAVDGVEADLIGGGTLQSKKAALSYYNKNGEILIPNNYFTASYQTIDYATKLVEQILINESITGSTDVARFYQEDVTQSFDNTLIAETGSISASVNLLSAISDTISNPTRVEQLPVDLITNVTIPAGDSLSPIVAGKLVLEQQF

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