Scaffold JGI20156J14371_10000534

Overview

Basic Information

• Taxon OID: 3300001347
• Scaffold ID: JGI20156J14371_10000534
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32998
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074972	Metagenome / Metatranscriptome	119	Y
F084335	Metagenome / Metatranscriptome	112	Y
F093979	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20156J14371_1000053424	F084335	N/A	MKIISAVRHSGKTYHSKSLGFADCDEIIANKIGWPNHFDKKEFSDKIYACPHIEEHQVAVSFSQDSWKVLESWLKNNDTILSIPEVWSARSFWEWPIKPNVLVTIDEERHKQNLVEINQNHMWPTIKFWRHLLEHEAKENDIKVVNTFEDAILYLNEN*
JGI20156J14371_1000053443	F093979	N/A	MSNKDEFKGKPFTKDNREHALKDITPLNMDDKRTVCNVIRLIYQNADDEAFNLGAIRELALEAMWMGKRMNNKLTEHRRAELKTEYIKQSDSYLNCNYDMYPAQGNWD*
JGI20156J14371_100005345	F074972	AGG	MKYYIKDTTLVDSPVKLFESTQHTVEYLKTAVSRKTGMSYEQYLTHLADLGHFGYDEREVYESMRDHFDMGVMRGNKFVRCSIFEATHNAEGSD*