Scaffold JGI20151J14362_10099181

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold JGI20151J14362_10099181

Scaffold JGI20151J14362_10099181

Overview

Basic Information
Taxon OID	3300001346 Open in IMG/M
Scaffold ID	JGI20151J14362_10099181 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1008
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096042	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_100991812	F096042	AGGAG	MNVRNKIVKALATRNKAAYIQAANGKFGFKVEGKGTYIWTSEEAESTADMWKAENNLSSRCIKKEVKSYELKVEGENNFWVITELDGTVIVIDTIEYTMAYYMRPRTKKAKVRDWKLPHKCYGYWDCFPDKVKAIEEKDLAEMEAEGYTDSYYRWLLDRNKLLEETFN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.