Scaffold JGI20151J14362_10016768

Overview

Basic Information

• Taxon OID: 3300001346
• Scaffold ID: JGI20151J14362_10016768
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4028
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032042	Metagenome	181	N
F040181	Metagenome	162	N
F060346	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_100167681	F040181	AGGAG	MNFNWLGNDGDIYRSLKGIANKGGYFGSINQANFWMRCAQESGVHTGPGFSWDDSVELEPGEFMFFCEGSVGANYTTQAGVQRQGWGRKTRYKTWGFVVDAAGVSLIYQLYRSYNDDLGGSYPNGKRTEVIWRRDNELVEATIAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVATRDGRWGTTNLYIIKTSDGNTLKYSGTNHYGKLSKITGRFTVKQHTEYNGELQTVINRPHKVESEILDD
JGI20151J14362_1001676810	F032042	AGGAG	MNKLYFNIGDRVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPIDYNGPWVADLDNGHWAYGSQISLIEGHNQYA*
JGI20151J14362_100167685	F060346	GGA	MALDMDEIVGDSQFHKSVMYCYNDRTHSFMFYTPSGDGKQIIPIGMFSPIIEEEIPYDPAALVELIADFMSREKHTFDIDVI*