Scaffold JGI20151J14362_10012866

Overview

Basic Information

• Taxon OID: 3300001346
• Scaffold ID: JGI20151J14362_10012866
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4816
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002035	Metagenome / Metatranscriptome	601	Y
F011942	Metagenome / Metatranscriptome	285	Y
F041708	Metagenome / Metatranscriptome	159	N
F051859	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_1001286611	F002035	AGG	MQEVMFLRLEKGKWYILSEPKSPGLIKKEYTPIGNRLVYPKKWGRKRAAXVLLSHQIMENEKIMDVTLDRLEYLKKLEKEVEEW*
JGI20151J14362_100128662	F041708	N/A	MKTNKMENTKNYSNEPIGEWKIGDEEHFISFALKTKPNWFHRLSARFFFGLRWVDYVSKSPSKGIKVGGTAQGKPNSRFKS*
JGI20151J14362_100128663	F011942	N/A	MNPEEFHYIDKFQNQYFKNMREVRISSLYWVWDNLTSNSGSIRKSTIVSLIPYESLSELLADLEESERYEDCKVVWDIMKLYNENEQNGEYKKLF*
JGI20151J14362_100128665	F051859	N/A	MRRVGDGLEFRFAGAKERGTIKEINKRGRKIISYSVSDGKYNYSVTKEMIL*