Scaffold JGI20151J14362_10002630

Overview

Basic Information

• Taxon OID: 3300001346
• Scaffold ID: JGI20151J14362_10002630
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12581
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F044800	Metagenome / Metatranscriptome	154	Y
F054892	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_1000263012	F054892	GGAG	MPEEIKQEEMKIVLEDGKEVSFSDLSDEQKILVNHLRDLDMKMGRLNFEAQQLQAAKNAFSKELNDSFEEVEEDA*
JGI20151J14362_100026307	F043681	AGGA	MAISFNNITYDKIMIPLRDKLRTEFAGGMPIYFDNQHRQVGNKSLRIYPVAQTLQDKRTRSYINLYEIEMDYVLNTNRSNEKALDEMYKDVTRIETILFNNSNGGDIPYFYAGMPTIDHNIDTDIPNALVSRISVPVLYEEVHERFVRFITSNDNFFVTSDGSFYIVRS*
JGI20151J14362_100026308	F044800	AGG	MATASTNAWKVNVEETIQAGIRNEFFSSLPVFRSRDFQHRGNQFAILRGNNSDPQSTMYAVIADTYNLTLEFYMLDRKRNDTTVKRFFSQVSRIEETFYSLLEIDPLFNVIINGIDYSDDVEFNGYRKATFDMTVRNVR*