Scaffold JGI20151J14362_10000378

Overview

Basic Information

• Taxon OID: 3300001346
• Scaffold ID: JGI20151J14362_10000378
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32903
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (18.97%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F028650	Metagenome	191	N
F034931	Metagenome	173	N
F036312	Metagenome	170	Y
F042344	Metagenome	158	Y
F049288	Metagenome	147	Y
F059442	Metagenome	134	Y
F076108	Metagenome	118	N
F076111	Metagenome	118	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20151J14362_100003781	F049288	AGGA	MSEGLVTKHSTITQVLEDFGNEMQTDLKAELVKDGAYVSGDLAEQIEFTSVINGEGFVFSLRLKDYYDYVNKGVNGTKTVKNNTPYSYMSSSKIPFYFAKQWMNNKGLFKTKGSTITSLAGKQYKVGSKDSQAFAMARSWKEKGTKGNHFYDNVVTEARLDKLKKDLASAAAGDLKTVITDTFKRLK*
JGI20151J14362_1000037817	F034931	N/A	MTNSGELIAINGVVIINDTAEKVLNADSYYISEDTVISSIKVNGAATNVLADYFTTPATGVKNGVLITPQKGDYFSAITLTSGSVVAILK*
JGI20151J14362_1000037822	F042344	N/A	MKRLFKDGIVTTLMGLTILSIAVSLYISKSHTETEAGAVAALGVLLLRAKDSLIGLTKK*
JGI20151J14362_1000037825	F076108	N/A	MTRIELSDNEIEYSTYFPIPDPHDIMYSFEEMVRMYTKADIEVDNYIIERAKEISIKNSN
JGI20151J14362_1000037828	F036312	N/A	MKRKLTHSLCEMQKVNKDLYEVFTTDFWDNGTYTIKDISHHSTEQEAIEQKLINKHKNENK*
JGI20151J14362_1000037832	F059442	N/A	MRKEDRDKPYIYKVYNSRGNLEEYSRYYRTKREAVDWYNTHGKWLEKHFNRKLILIDTDINLFTYVPSALFNRQRN*
JGI20151J14362_1000037838	F076111	N/A	MTLEQLTTKLELNILIERVLEKNGAYKQPLSKEEALKGLTLSEDAKSTLNTLKSALEQINKLYDLSIMYSKELKNKDSQIYKLSVENSKLRTRANLADQRTNNITDYIELHKNKTT*
JGI20151J14362_1000037847	F027524	N/A	VNEAFLKEKQQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRTTAKERMESIYNKIRNNNK*
JGI20151J14362_1000037848	F103288	N/A	MSIIVISILAILGWTSIFKQTFTTKEGFKYVYEPISKILYTLDFKPVSCAYCLSFWIGLVFTIVSLDLSYMVIFLYFAKQD*
JGI20151J14362_1000037849	F025412	N/A	MDYRKLKWGALKSYATKLGINTKGMTKVILLEWLDAMPDVAHGIEELTPFTGIKQEHPLFEEIKDYLPYLKAYKKLHAISPVPEVNKAIAALFLKYIEEDKNIRLNLGCGICKQRYYERMIAGYNRLVDEYGGGERI*
JGI20151J14362_1000037850	F099320	AGG	MSMEEENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIEADGEVYFINLYED*
JGI20151J14362_1000037852	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPRNFIFEVVNNSEVNEQMLNRNRIEQNGKRI*
JGI20151J14362_1000037853	F018478	GAG	MVKEFEEMDWSKEYTYKDKKIYISHETKKYIICSFNENGVGKFKLDKTEFYG*
JGI20151J14362_1000037858	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYDNPFTRTIDLLCIFNDRKDVLKCKPSELAIDLNHLLVEPSRTLKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFADNPNVHIEQMPDILASVIFPVDKNNKVMAIEPSYFRNLADDIRNTMSIEDAFPICVFFCLLSANLRQTTQDFLNTKLESMTEESREAILEVAKDLEKDGVGLPPSITSAMETLQKDHITKK*