Scaffold JGI20171J14444_1024889

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI20171J14444_1024889

Scaffold JGI20171J14444_1024889

Overview

Basic Information
Taxon OID	3300001345 Open in IMG/M
Scaffold ID	JGI20171J14444_1024889 Open in IMG/M
Source Dataset Name	Nasutitermes corniger P4 segment gut microbial community from laboratory colony in Florida, USA - Nc150 P4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	726
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location Name	laboratory colony in Florida, USA
Coordinates	Lat. (^o)	26.0625	Long. (^o)	-80.2332	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092852	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20171J14444_10248891	F092852	GAGG	LMARKVVSGLLYPYNSDKAYAQKSEISKQIDVYSYSMTHRHASCSAGVICRDCGVVTCNI

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