Scaffold JGI20152J14361_10038500

Overview

Basic Information

• Taxon OID: 3300001344
• Scaffold ID: JGI20152J14361_10038500
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1430
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021057	Metagenome / Metatranscriptome	220	Y
F052534	Metagenome	142	N
F069439	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20152J14361_100385002	F069439	AGGAG	MRKLQNTNFTIYTNKNFKNSIFINTNTKYNLTYMCSSMQKVAQCLQAHNLKNATVRILTKRFNNACAKKLAQAAVIRIANA*
JGI20152J14361_100385003	F021057	AGGAG	MQHLKTITKTKTTTVESVHVDTVYCVIQQCFNNLQVLEADCTSANYFINSANIFAQLTALYARYADSTDYISLKKVMQVFANNITYTDESSLFTQVVKNTAMQNVQLENYVYLSN*
JGI20152J14361_100385004	F052534	AGGAG	MLKQKALTKNLIATLCTTSNTLFVHKNKTVKKAAFVYTQNAQKVVRNLNAQQQAAFNNLPATYMQNAKQFVINKLAQSTILKS*