Scaffold JGI20152J14361_10007348

Overview

Basic Information

• Taxon OID: 3300001344
• Scaffold ID: JGI20152J14361_10007348
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5278
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047684	Metagenome / Metatranscriptome	149	Y
F061271	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
JGI20152J14361_1000734811	F047684	N/A	MSEIIKGQVSVDRSVYTEFSKKQGFFLMCADVWSVVSEVXDVTCKGKPTYVHDITEICVRFRIDGKAVKTAGFEELYIKLYGDGAYAKLLLEFEDEVEKAYFATTEYTVCP*
JGI20152J14361_1000734813	F061271	N/A	MGANELDKIVHQWCDDNDRWMYIEYNRDGKVMGLNFMQGDEYELFKEVYCTTDPGLTDFYEAMLYTFPIEQKSCSELSFINKCMWAYFTAVSCSENYR*