NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20133J14441_1086583

Scaffold JGI20133J14441_1086583


Overview

Basic Information
Taxon OID3300001340 Open in IMG/M
Scaffold IDJGI20133J14441_1086583 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)557
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026606Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
JGI20133J14441_10865831F026606N/AGQGEKMNESEYEKIEKELEEFLGIKAEDLRDEIVEKAVWLRKDSSKMVAVGIFPDGDYDVGIGQEGNYDRYDNDERLWVSFSLIEPWDLPEYQTVVENEDGDGYIDELSGEEFKDDEELLEEVRTSVSSGFNGRFEEEWKKFLKDFAEWYDSIKDAERESD*

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