NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20133J14441_1056810

Scaffold JGI20133J14441_1056810


Overview

Basic Information
Taxon OID3300001340 Open in IMG/M
Scaffold IDJGI20133J14441_1056810 Open in IMG/M
Source Dataset NameFerric oxide microbial mat and aquatic microbial communities from Rainbow Spring, Yellowstone National Park, USA - RS3B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072527Metagenome / Metatranscriptome121N
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
JGI20133J14441_10568101F101506N/AVSEDIVARTKISGIEQRIQSLEQQINDIRTTQLRQLERQNYVLALLAISLITTIVNLIVLLVK*
JGI20133J14441_10568103F072527N/AMSQQQNRLAELLQQAVLAFGAERVQVLQKIRQYIATTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQINKALKGVTP*

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