Scaffold ML7_10038586

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ML7_10038586

Scaffold ML7_10038586

Overview

Basic Information
Taxon OID	3300001336 Open in IMG/M
Scaffold ID	ML7_10038586 Open in IMG/M
Source Dataset Name	ML7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pennsylvania State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5604
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake → Benthic Lake Microbial Communities From British Columbia, Canada, For Chemocline Samples

Source Dataset Sampling Location
Location Name	Wetlands, British Columbia
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-119.583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
ML7_100385863	F089552	GGGGG	VNAINRHSERRRIEKSFEVFGLLQRHRELIVEALDSDVWDWFRDCDGCTGVPDMYWPTKYFPPCLRHDFDWTIGNGGLDGSRTFYDLQRAAVTVVWYGWSQMWREPQR*

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