Scaffold ML7_10003463

Overview

Basic Information

• Taxon OID: 3300001336
• Scaffold ID: ML7_10003463
• Source Dataset Name: ML7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Pennsylvania State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42123
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake → Benthic Lake Microbial Communities From British Columbia, Canada, For Chemocline Samples

Source Dataset Sampling Location

• Location Name: Wetlands, British Columbia
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015850	Metagenome / Metatranscriptome	251	Y
F017137	Metagenome / Metatranscriptome	242	Y
F034145	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
ML7_1000346312	F017137	GAGG	LPFQKIPAKQDPYTPGPFENERDIQRRQRYEAQEAKRAPRIQVDQVLTLNSWLIGVIIAFVASAIVSFNGITAVAVFVGLSTGWMAYLFFFFIELMYLLFLVAYLLLESRENEDSRGALAGMVFFAGVAVLANAFHTFDYWQWAFDEPRAWAGVVLSVSAPIAIISASKMGARVIFARPGVY*
ML7_1000346339	F015850	AGGA	MGDLERSDLDERLLSLARRSPAEIAELTGLDAGFVAERVAYLLDSKDWLTDRQEERLLLIEAASLKDRAFAMLEDVGPQEFAGVANVVLKSLRLVSERLDARRRLVDSDIEKITAAHAKVFAQAFDAALQFIIAGFKAFEGVPDDADVDALVEQGLRRAGAVLDANLFE*
ML7_1000346356	F034145	N/A	MNDPDHKEWDQWDFKLFKAHYILKDWYRNGIPVWWDESDRVTFDAKPRVSKSRAAIERASEKESKKKTKTHGLYYAAEPRLMDGENMPTRAEWLEEQERKNSTPEPRRRPPREPRILQGKKQ*