NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ML8_10055667

Scaffold ML8_10055667


Overview

Basic Information
Taxon OID3300001335 Open in IMG/M
Scaffold IDML8_10055667 Open in IMG/M
Source Dataset NameWetlands benthic microbial communities from British Columbia, Canada - ML8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1458
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)49.283333Long. (o)-119.583333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008236Metagenome / Metatranscriptome336Y
F040587Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
ML8_100556671F008236N/AMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEAIAQGFKLFAWCDSDMKIAPKRPKSKVKAEAWRKALPKLVVLNGSKFVTCPEIRRGRSEITCTGTKDSISCDLCVRGLGNVLFPAH*
ML8_100556674F040587AGGAGMIQWVGVIIAILGFAYNGVKDYQKGEIKLPALQEKQELTKTNHPIQYCLMAYDPNVDKVFYQHENGQWYDYPPQQRRYASTPQVRQQY*

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