Scaffold ML8_10042757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ML8_10042757

Scaffold ML8_10042757

Overview

Basic Information
Taxon OID	3300001335 Open in IMG/M
Scaffold ID	ML8_10042757 Open in IMG/M
Source Dataset Name	Wetlands benthic microbial communities from British Columbia, Canada - ML8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1774
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	49.283333	Long. (^o)	-119.583333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
ML8_100427572	F021068	GAGG	MQPSDHTIYAVCIPGESVRYQAKSRIVPIMGGSYALSAAERESLRKQGYIFDDENADLSALNGRWGELSCIHWMINNAKQENIGNAQYRRNWIEPQGEWYCPETLYLPEPAQFSCTLEQQFYGGHSAFDAPAITRKLADDGNWLFTRSEIDKIWAQSSFIGCNMARGPRQSYLRFMTVLFAGLAPIWRQNKEHFLSIENYDKRAIAFIAERLITGMVLCRDRIFPGMEIATAPIGFIG*

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