Scaffold ML8_10009165

Overview

Basic Information

• Taxon OID: 3300001335
• Scaffold ID: ML8_10009165
• Source Dataset Name: Wetlands benthic microbial communities from British Columbia, Canada - ML8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9103
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F084821	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
ML8_1000916514	F007305	GGA	MKIIEKTIRKAYKNWNPTRLIRTYHYAAAFDGTKMICFTQNNPIKTHAGAYRIGKNFNLPKYKKFPFYHAESRLISKLLDRYNTIDSSWRIVVMRINRKGLILGSKPCKNCDKLLNSVGLNDIYYSTDCGNFNDSFGNFIQVDELTMPMSMV*
ML8_1000916515	F007110	AGGAGG	MNCIYCQNSMDFDRYEFLIETGRKIICKDCSVENRAVGFMNFSHKTAPSLVLVPANATETIRKLDRANRRAR*
ML8_1000916516	F084821	AGGAG	MDWLDLYNFLHQKANNTKGLGSFPWQEEIRVFDFETLEYYPIDFIKMPDGKISLKVDTYQSGDKNDLEKS*