Scaffold ML8_10005320

Overview

Basic Information

• Taxon OID: 3300001335
• Scaffold ID: ML8_10005320
• Source Dataset Name: Wetlands benthic microbial communities from British Columbia, Canada - ML8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10033
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic → Wetlands Benthic Microbial Communities From British Columbia, Canada

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -119.583333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F064189	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
ML8_1000532017	F000325	GGAG	MKTANGNDKLGKENCIVVSRPVGDTCPSSCAFLGNGCYAEQTEKMYPSVRPAGMQNIITERGRIRSMIIDAERKGKSIRWHERGDWFLDGELDIDYVANVTWACESILADGGSLPDMWFYTHIYDSRLVSLEKYMHVYASVHNDNDMGEALAQGFKLFAWCDSDEKIAPKRPRSKVKAQAWRESLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKSSVACNLCVKGLANVLFPSH*
ML8_1000532019	F006543	GGAG	MKKFSFIVDVVASDLDREVVVSSISECLTEALPDDVHANVKAGEIKSFSEQGYKVWRARVTGVTAKQAGDAHNSKTEVEESLA*
ML8_1000532022	F064189	N/A	FMIIQTIIPITITTKKNGLQRRMAKNFSDLHGADPKTMTRDQAMIYIINFFNSRMNAMNKASINKVKELTTNHEIAVSELVNKYVDLVHKNS*