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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001334 Open in IMG/M |
| Scaffold ID | A2165W6_1002336 Open in IMG/M |
| Source Dataset Name | Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12895 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Axel Heiberg Island, Nunavut, Canada | |||||||
| Coordinates | Lat. (o) | 79.26 | Long. (o) | -90.46 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002416 | Metagenome | 561 | Y |
| F009773 | Metagenome | 313 | Y |
| F013685 | Metagenome | 269 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| A2165W6_10023365 | F013685 | AGGA | MKNALKRILLGILLGAILAPATTQAQFTVFDPAQYSLQIERQIEEANRWLERINQYTNEINKMVEQITTMKGVLTQAEKLVLHNANLTRTMAQIGQTVRDVFALKRAMETMVISRLNMIKAIKTRLASGIFDPQADLRDFEDYLRNSIGRTEQDKIATMNRIAMFDATLARLYHDLQTAEARQAGAALEMNQAKDKLEAELAKPQTEQCATCISDLKLEIASCEKMIADLDTQISNLSTQIEDRVKLYNLTMEERVRIANRVKATDEAWDQLSIVKDGIFEAIERGGVPSPSPR* |
| A2165W6_10023367 | F009773 | GGAG | MRVRPIRPNIYLPVVRFGVADSDWFSVLLISCAGYLAPVPLGLTVLYVPLQMWTWLLATAGSIGFFNYVRIGRRPNWLSHKLKGLLLHHRQYRAIPNGKKRSFDRAWLIDAETGHALTDSYCAPPMGGAQTALLLEHNNRLQEACEERWNALLLTTD* |
| A2165W6_10023368 | F002416 | AGGGGG | MNNFVELLNVPGVENSRVARVGRKLILTGFGLKALHSAVAIALMMVLGVVSASAQTPTGSFFNGNSSQLGNSFRSVTFFLAAAMIIAGIIFIAIGIVTSGLRESLSTWKFITGAGCFAFGGVCAAIYAFSQGDTVPLDNQF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |