Scaffold LCLOrf001_1005879

Overview

Basic Information

• Taxon OID: 3300001325
• Scaffold ID: LCLOrf001_1005879
• Source Dataset Name: Marine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1527
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location

• Location Name: Red Sea
• Coordinates
  • Lat. (^o): 21.351508
  • Long. (^o): 38.078207

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F007267	Metagenome / Metatranscriptome	354	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLOrf001_10058791	F001594	N/A	MEKTTKLTKDEYLESLDPDNLNLEKKDLINFCYKCINEWKNNKIGNFKYIVAMELMIGAVRITPEDVMKTVWKKILVWFWDLQYKKCTCRERWYVEEV*
LCLOrf001_10058794	F007267	AGGA	MRLKIFTCPECRFRKFESINALNVHIGKSHLVNYKISIVNNKPVIKLKTRARAQYIKGHA