NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCLOrf001_1004978

Scaffold LCLOrf001_1004978


Overview

Basic Information
Taxon OID3300001325 Open in IMG/M
Scaffold IDLCLOrf001_1004978 Open in IMG/M
Source Dataset NameMarine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1708
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Euryarchaeota incertae sedis → candidate division MSBL1 → candidate division MSBL1 archaeon SCGC-AAA382A20(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location
Location NameRed Sea
CoordinatesLat. (o)21.351508Long. (o)38.078207Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030363Metagenome185Y
F052244Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
LCLOrf001_10049781F052244N/AIWHSSTKLSWRLRKRMSKKLRTEIYLLLLTLILVLAVGIITFYIVAGTWARIDRGLDQIDNMIDCMKGCSP*
LCLOrf001_10049783F030363GAGGMNEKHHIAPSGNCDSCGRYLINDFWACQRPLTHKWGSGEVWDRICTQFGEPDVAFGKTDGIPNGIKAIDHKTGYEWADLPFSTNNFDFGYWDPPYDKLYKQEGQEIWRTVKRLAILHTHIWPISWLRNAEREAVIGVTMGPMKQIRALQVFMKGNKELEAFE*

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