Scaffold LCLOrf001_1004978

Overview

Basic Information

• Taxon OID: 3300001325
• Scaffold ID: LCLOrf001_1004978
• Source Dataset Name: Marine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1708
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Euryarchaeota incertae sedis → candidate division MSBL1 → candidate division MSBL1 archaeon SCGC-AAA382A20 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location

• Location Name: Red Sea
• Coordinates
  • Lat. (^o): 21.351508
  • Long. (^o): 38.078207

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030363	Metagenome	185	Y
F052244	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLOrf001_10049781	F052244	N/A	IWHSSTKLSWRLRKRMSKKLRTEIYLLLLTLILVLAVGIITFYIVAGTWARIDRGLDQIDNMIDCMKGCSP*
LCLOrf001_10049783	F030363	GAGG	MNEKHHIAPSGNCDSCGRYLINDFWACQRPLTHKWGSGEVWDRICTQFGEPDVAFGKTDGIPNGIKAIDHKTGYEWADLPFSTNNFDFGYWDPPYDKLYKQEGQEIWRTVKRLAILHTHIWPISWLRNAEREAVIGVTMGPMKQIRALQVFMKGNKELEAFE*