Scaffold LCLOrf001_1003873

Overview

Basic Information

• Taxon OID: 3300001325
• Scaffold ID: LCLOrf001_1003873
• Source Dataset Name: Marine microbial communities from the Red Sea - Atlantis II brine metagenomic assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3512
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Red Sea

Source Dataset Sampling Location

• Location Name: Red Sea
• Coordinates
  • Lat. (^o): 21.351508
  • Long. (^o): 38.078207

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F010737	Metagenome	300	N
F090277	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
LCLOrf001_10038731	F005319	GGTGG	MTDQTFAIIWILSFGLYFLIYTFWIPVKTQQRIENWLRDSESDETLLLALEVIVKRIREQTLYDFEEFMLPQARENLQKFWSGAMGNAAKELKKSEEGGQLSLMANMANELSGQPWYVQAAASKLMPII
LCLOrf001_10038733	F090277	N/A	MIGIDWSSMGAGEVLSYTINVDGQGLYVEKFTITDMNLGNQPELFEFVIPPNSTVKIQGTQSNNNGAISCILTGYRV*
LCLOrf001_10038736	F010737	AGGAG	MSSTAITRTFDATPTDKTYFSLTDNMSSSNLGNIQVPDGASRIARIDCAFDTPDTKGVVCAAKLSGSNMSEQNLTIYGSCGDTADAGGIPSYNQVDVDFPVSGVNNIDLQIALQYTTGTATASGGSVTLFFE*