Scaffold B570J14230_10123531

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10123531
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 759
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_101235311	F000473	N/A	HGINQWTGEPNKPVFYTPEMSKAIRGITKPANNLQMDIVKYPEFLAIRLYEDNFVQFEGVKKEMVIDYVAKVKKLLESYGVRCELEGVPSERILR*
B570J14230_101235313	F000671	GAGG	MDKVLCYSCNKTKNKLNLKKSTLLPINLFMCDGCIESKFEPRWLVIITGRQNGPESVREFVLKKKYVGDEISASELLI*