Scaffold B570J14230_10057159

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10057159
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1273
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_100571592	F009135	N/A	MNKPKYYLTVNLPPNFDAVDAEAIKTDLMTYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED*
B570J14230_100571594	F042296	N/A	MKLFKSIIKWTGVIVYAGFLATVAYAATMPEPIKLYVIYTYKFNERVIEKIYIKKENAQKYCDLYKDSHNYTFEELTISE*
B570J14230_100571595	F007859	N/A	MKNLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHYINNKYITYSMVEISTNNVYTAHTNYYRAYYNCDGKIIKTTPNN*