NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J14230_10027948

Scaffold B570J14230_10027948


Overview

Basic Information
Taxon OID3300001282 Open in IMG/M
Scaffold IDB570J14230_10027948 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010598Metagenome / Metatranscriptome301N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
B570J14230_100279481F067403N/AMLVFIKLTVIFQLTKIQNFLSEYALELASTDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINEYTTPFRATKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDSTRVHTPAAGSIPNNVLETHYVLGSTRATVAPSSGKTMSFFYKPVYNTSIDTIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLFKALILEWRFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQKENLKQGFRFITNPIDLALLMFEHELLLAEIKSIRQDIXTPLTNPLSLIDLNNLDETSGTNPTLLKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPXXKVTLMDYXTLGISTFLALGFLIQCSMVTANTXMRWRSERDERIREQERA
B570J14230_100279482F010598N/AMTSLTTPRRVIIFGGSNAKRIVPFLLQLTKGKGIRIEDRTVSGHSLGDLRNFPKSTEIREKDFLFVLSGGNDIFEKHIKIHRRFGKVHKICLTKCVPNPLSSIQKLYENLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRAQNAANSCLIKTLKAAAVILKVEKIIGLNCKEKRKGYPDHMIDSVHLKQKFYLKAAENLCKIIAEKSSSC*

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