Scaffold B570J14230_10010860

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10010860
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3472
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005299	Metagenome / Metatranscriptome	405	Y
F008491	Metagenome / Metatranscriptome	332	Y
F011762	Metagenome / Metatranscriptome	287	N

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_100108602	F008491	N/A	MEFEQLIIKGKQKNNMAKKIATKVNYQVTELVNNLNEAATTISEQKRDFYTTKALYNAKRLSSILNKAKVGAMALVLTLGMVACGTASTEVKADSTAVDSTKVDTAVVAPVADTTSVVK*
B570J14230_100108603	F005299	N/A	MNKITNTPNHLIDPIDTPNEIWEEKVGYDSANKRMIAKVYKHLYNVMTLVSKPSWTSIIREMLIEDGKIGKVSINGYYSTIRKNLKDIGVIQYNGRKGLSKGPNWDRFYGNEDWNWFRTNTNSGGYGTIIK*
B570J14230_100108604	F011762	N/A	MSKSKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDETSVRKYIGELEVETKMDKLENSLIKNVLSKKDKKEVLASKELSDMVPALEVLVDANFRDMNARRPEDTDK*