Scaffold B570J14230_10004466

Overview

Basic Information

• Taxon OID: 3300001282
• Scaffold ID: B570J14230_10004466
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5569
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F027513	Metagenome / Metatranscriptome	194	N
F093862	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
B570J14230_1000446615	F027513	N/A	MGKNSGVKPGEQVASNRALHNDMQLVENPNGEYDAVVFHTDRYTLIRGEYYPIGRNFHYPKIWGRKYAATKLIGDIMADKRRIIQEAESELIKLQKCLDKVNLWSDTDQ*
B570J14230_1000446616	F000785	N/A	MRVTNKKGMKFDCTRLMKWAEEKLGKSKCTAIAFTWDPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQRFRWYNHYNVKYGYKNNPYELAARENEKLVKRAYKKQK*
B570J14230_100044662	F093862	N/A	MNIMTVKFESELQIKALTKLLSAVYESPVRPRGRHSDRKKVLGGRWRKWSQNDIPWRMAERVTFYKVNR*
B570J14230_100044665	F001754	N/A	MSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLVEANQFLKMFKSESVKINSILGEYPVVMGEYPKKFHSEIKSDLQSAGFGSISKYLLK*