Basic Information | |
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Taxon OID | 3300001282 Open in IMG/M |
Scaffold ID | B570J14230_10004466 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5569 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000785 | Metagenome / Metatranscriptome | 891 | Y |
F001754 | Metagenome / Metatranscriptome | 641 | Y |
F027513 | Metagenome / Metatranscriptome | 194 | N |
F093862 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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B570J14230_1000446615 | F027513 | N/A | MGKNSGVKPGEQVASNRALHNDMQLVENPNGEYDAVVFHTDRYTLIRGEYYPIGRNFHYPKIWGRKYAATKLIGDIMADKRRIIQEAESELIKLQKCLDKVNLWSDTDQ* |
B570J14230_1000446616 | F000785 | N/A | MRVTNKKGMKFDCTRLMKWAEEKLGKSKCTAIAFTWDPTEESCGWYNWDETIWINLASCKRMITVQKTLLHEWTHAQQRFRWYNHYNVKYGYKNNPYELAARENEKLVKRAYKKQK* |
B570J14230_100044662 | F093862 | N/A | MNIMTVKFESELQIKALTKLLSAVYESPVRPRGRHSDRKKVLGGRWRKWSQNDIPWRMAERVTFYKVNR* |
B570J14230_100044665 | F001754 | N/A | MSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLVEANQFLKMFKSESVKINSILGEYPVVMGEYPKKFHSEIKSDLQSAGFGSISKYLLK* |
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