NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J13895_1029545

Scaffold B570J13895_1029545


Overview

Basic Information
Taxon OID3300001274 Open in IMG/M
Scaffold IDB570J13895_1029545 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026559Metagenome / Metatranscriptome197N
F038204Metagenome / Metatranscriptome166N

Sequences

Protein IDFamilyRBSSequence
B570J13895_10295451F038204N/ALPTKIEYFEVGNCGWGIILRREIDTNGKNYISHTDDSVTFTDSFTDIYYETQYDDVTHTRKFNVIRDELIASHKKKIEELQKEVDILEASDTIDKYNSIVYKK*
B570J13895_10295452F026559N/AMKYQIIERFAWYFPDNDIEVSVYRKQSYFRRFIMWLFFDAELRTYYKTLDNCQVKKG*

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