Scaffold B570J13895_1003800

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1003800
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_10038001	F045702	N/A	MTITQTLNSTAGRFTTLVVNKGANTNKFCARITSATEKTVRFYDMNAEANRVVPTASVVY
B570J13895_10038004	F010915	GGA	MKQKLPPHNMVVVVQVGLDLYTLSYVKYEECDIHQCIKYDLSSEDVSQFLGNN*
B570J13895_10038005	F037694	N/A	MLNKNQAFLVNEFIRKNANRNLWEVSDKLYSLLSEITKAEQEIKNETETAAA*
B570J13895_10038006	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKSLPYPQTVNVYVVQPPSPRNNWSKNNVGDIIKICNPYYEMATYSHPGFVPVKE*