Scaffold B570J13895_1003057

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1003057
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F014590	Metagenome	261	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_10030571	F000821	GGAG	MNEEYLRAKFNLCLDEAEKDIQQQEIARAIKNLERANSALSRLFGLDEGDNNE*
B570J13895_10030573	F044984	GGAGG	MTDEIKKRVATAKRKNVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANAVPDVAGRTDYESTDEGYNGGEA*
B570J13895_10030574	F014590	GGAGG	VRTRHLSLVTSTHSVTTTVRSNVPSPYGPVRAGLTISQTTQDQQLTELLNSLENVVANLNYKSFEVYDTLNIAIEAVSAALKDTQTSETGTDADRC*