Scaffold B570J13895_1002719

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1002719
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2266
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006653	Metagenome / Metatranscriptome	367	Y
F009331	Metagenome / Metatranscriptome	319	Y
F085686	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_10027193	F006653	AGGAGG	MSEPELTNKYRDNLKIDALRADVDALKVDLTNFVGALLQSGIVELVKDEEGNIIYKINKVVLVDESVQQD*
B570J13895_10027197	F009331	AGGA	MICQNCHKAGEENTLTHYKRSSQWHTKCDDKGCVCQHKTGPGYVKRDGSKVPLMQTQSP*
B570J13895_10027198	F085686	GGAG	MASNVQSKLLLEAAQQYAQAISPEALAVLEGRGISEETAGLFQLGTITNPING