Scaffold B570J13895_1001373

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1001373
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3464
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F048940	Metagenome / Metatranscriptome	147	Y
F058096	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100137310	F048940	AGG	MTASQRMERQFFIKFISLIDEVQGKQKLPSQIVASRKSAWVKQVSNPKQKKDALTLV*
B570J13895_100137311	F015080	N/A	MMFDLLKFEPHNIPNAIAARHKFENGWEISVVAGPGLYGRIDENTYEVGIFRPNGNLTEDVSGWNTKEEVSAMMWVLSQL*
B570J13895_100137312	F058096	N/A	FFILDTMNAQMTVDECKVMWVVGALQRLATLGMIGPDIPLKLTPEAVDDYVMIDNHRNILFESDFEIASIFNALAKDECDEEPNPDDVEAIVDLILEYKNNRTEIVKFALSHQSI*