Scaffold B570J13895_1000834

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1000834
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4732
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F009264	Metagenome / Metatranscriptome	320	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100083410	F000962	N/A	MNIHVPEELKIKYPQYEFRGKQREINNRIVIEAYNPTTEQTFFYSFEEDFFWMAGQIPDYKLQKP*
B570J13895_100083413	F009264	N/A	MRAYLEFSLMDQEVDHLAKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFRNYPYKDDDCEMYPIIWVKLDYNNSNKKMDYVCFQNLKYQAVVYFAPDSWNCSRKSKKIKF*