Scaffold B570J13895_1000255

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1000255
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10401
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (73.17%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Associated Families: 16

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003331	Metagenome / Metatranscriptome	493	Y
F010764	Metagenome / Metatranscriptome	299	Y
F013514	Metagenome / Metatranscriptome	270	Y
F014121	Metagenome / Metatranscriptome	265	Y
F016800	Metagenome / Metatranscriptome	244	Y
F017818	Metagenome / Metatranscriptome	238	Y
F019061	Metagenome / Metatranscriptome	232	Y
F030059	Metagenome / Metatranscriptome	186	Y
F036765	Metagenome / Metatranscriptome	169	Y
F037700	Metagenome / Metatranscriptome	167	Y
F047649	Metagenome / Metatranscriptome	149	N
F057309	Metagenome / Metatranscriptome	136	Y
F071163	Metagenome / Metatranscriptome	122	N
F085383	Metagenome / Metatranscriptome	111	N
F091921	Metagenome / Metatranscriptome	107	Y
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100025512	F014121	N/A	MTMTDTAYKIWETFKAELIVEPTDDMKQALASAIRVISSLIERDGVLENEPWHLHIAKELNEISYDVEIETL*
B570J13895_100025515	F091921	AGGA	MIEMRIVEHEMGMRPDIQYRFMLFSLGQGGYLCPPNPDMKWSEWRTCPYVKYEEIEK*
B570J13895_100025518	F010764	AGGAG	MIKIQKTYHLALTEDQAKELYEFLRFAKEGSYLTHDKELMLVYHELKNLFDSGIR*
B570J13895_100025519	F037700	N/A	MKKYRIKKETYGDTTKYYPQEKFLYSWYNIFAYEVYFDGGYDTLEEAKEQLCEYCREPVVEYLDFDPVRDCR*
B570J13895_10002552	F003331	N/A	MAVSEKAKIFKNVWCCAYQRRYAAKLKGDWELYDREHQTLLMCLNMKDAKWWSFDTEKTRYLKL*
B570J13895_100025520	F030059	GAGG	MNDTINKNLTLIQEVAAKALEEHKNSTERFGGVNYANLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELEW*
B570J13895_100025521	F071163	GGAG	MTKTQSALERVIIELDNWCDNWTPTSYNDPRISLRQIADRARNVLEQEKNDYDFK*
B570J13895_100025524	F019061	N/A	MTEPTDTEILEFLLNQFQAHSLKMNGESDWVFINTGFPMSRAKGRTARDAVINAMRAK*
B570J13895_100025527	F047649	AGGTGG	MRYYETRTYEHQKDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVREQNLTITPDFAKLIGMK*
B570J13895_100025528	F057309	GGA	MTNPLIDKYFELYPEKKEKPKFPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKMTFEVYVYKP*
B570J13895_100025529	F013514	GAGG	MSINLEELQKFLDDNNITFEEYMRANMITDEERKYIDKIWVDAIYKNLGEDT*
B570J13895_100025530	F016800	AGGA	MLDAFTDYPIPSYGDVEGKQAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTYAELETLPWTKVSYPHSI*
B570J13895_100025533	F085383	N/A	MTDQEKLHKLCILELLIAIDEDVVDWRNYPKLWEAVKLADRTLDIWAGDNLKQMKAELEEV*
B570J13895_100025536	F099191	AGGAG	MKRNNFDFMDAWTVLIVGTTVLVLLAAPITGVMKVITTQQALNEQCGTNYNFFQVATAGDNLSRLCQIKNQTVTIK*
B570J13895_100025537	F047649	N/A	MRYYESRTYEHQCDFDAKNRAQKASQDYYNKWINLRKEVRNLVREQNLTVTPEFAKLIGLK*
B570J13895_100025539	F036765	GGAG	MTIKTTELLKLFTKAKQLGFSVEVREDKDGDYVIRIYEMFRPENFDEKAVITQKGESNWNKDGYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTSEEKELLGVK*
B570J13895_10002555	F017818	GGA	VNKDAYYDWIAENDTYPEHSHKFIVGLYTPDGGRFDMLHRYFGTFDTKEEAKIFAANYREKYTKPGFISSVRVFPLCEVVEDT*