Scaffold B570J13895_1000169

Overview

Basic Information

• Taxon OID: 3300001274
• Scaffold ID: B570J13895_1000169
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12788
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (54.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13895_100016914	F093764	N/A	MARRNKSASRQMVESLKEQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEEMKPIQYVLNKLDPEDSESHL*
B570J13895_100016915	F073458	N/A	MSAKLIALASEIVDTNPAGAQLIVNLTKAETGADIIEALDNYDSTVLENHTEPVDSEDDDYVTLTDSEGTVTYV*
B570J13895_100016916	F053990	AGGGGG	MIDTCILHDDYEDFAQKFLGVDYEDYISLQMGLPDEDELEIEYPVIA*
B570J13895_10001692	F013631	AGGA	LVDLNTVFNYTASRWDWQDGNVNQMWIQEIEESPDCYRYVAVAYNPRKDATMVMSEPRCYADTLNWVRKWCNSFCILPEYC*
B570J13895_100016937	F007265	AGTAGG	MISPYTVVPGTDIVHSITDVYELCDEAEGCTHTVKLNADNGGVYLEATEKQHDSQHKGITEYMSIANKELAIVVAKRILELYGVN*