Scaffold B570J13893_104711

Overview

Basic Information

• Taxon OID: 3300001273
• Scaffold ID: B570J13893_104711
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 908
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, WI
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001307	Metagenome / Metatranscriptome	726	Y
F005772	Metagenome	390	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J13893_1047111	F005772	N/A	MYDMDVGCSLKGSTASVIAYWDSFDIYIIRISASSPKWGYVCGGNGMNVLSYAHPQLFKVFKHLIYV*
B570J13893_1047112	F000211	N/A	MSFIYKVFEHLKQLWMGIWWHIHSVTTTEVSPDLGDFTEILDDVSVEMIPIHYH*
B570J13893_1047113	F001307	GGA	MTAIHTITTTDVSPDLGELAEILDDVNVKTIPIRYH*